NOTICE: Unfortunately, maintaining these recs pages has gotten to be too much work, given the amount of fic that I read. So from now on, I'll be keeping track of good fics via my AO3 bookmarks and the delicious account Grey Bard started for me.
The Funny Stuff
"'But you don't understand!' Mulder wailed desperately. 'There's no escape! Not as long as there are women who write about rough male/male sex to create an environment for themselves where characters can enjoy being sexually submissive without conforming to male/female sexual archetypes and in the process using the hurt/comfort mechanism to break through social taboos against homosexuality by creating a stress/pain situation where male sexual contact is both punished and permitted!'"
WHAT'S IN A NAME?
Scully/Alex. Which Alex, you ask? You well might.
Gift of an Enemy by Sylvia
Mulder/Krycek. Very good characterization of Scully.
Mulder/Krycek. One of the funniest fics I've ever read.